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Task ID : 2870_16178001127678075
Mission Info :
Model: trained based on ATAC-seq data from mutiple tissues of the Rice (Oryza sativa L) variety Minghui 63 (with reference genome version RS2)
Input: variants based on Minghui 63 reference genome version RS2
Task: predicting the effects of variants on chromatin accessibility
The VCF File You Submit :
Download the predicted results:
Results:
The variants are ordered in the graph as the predicted probability that the alternative allele belongs to open chromatin in a tissue minus the predicted probability that the reference allele belongs to open chromatin in that tissue. Moving the mouse over the points will display the scoring value, feature information, and allele information for each variant.
| Chromosome | Position | Variation ID | Ref | Alt | Diff-score (Alt - Ref) | Tissue |
|---|---|---|---|---|---|---|
| chr09 | 17599142 | vg0916410213 | C | A | -2.080e-02 | ATAC-seq, flag leaf, rep1 |
| chr09 | 17599229 | vg0916410299 | C | G | -3.670e-02 | ATAC-seq, flag leaf, rep1 |
| chr09 | 17599532 | vg0916410603 | G | C | 4.280e-04 | ATAC-seq, flag leaf, rep1 |
| chr09 | 17599577 | vg0916410648 | G | T | -1.770e-02 | ATAC-seq, flag leaf, rep1 |
| chr09 | 17599855 | vg0916410925 | T | G | 3.520e-02 | ATAC-seq, flag leaf, rep1 |
| chr09 | 17599981 | vg0916411051 | C | A | 2.320e-02 | ATAC-seq, flag leaf, rep1 |
| chr09 | 17599991 | vg0916411061 | C | G | -1.730e-02 | ATAC-seq, flag leaf, rep1 |
| chr09 | 17599998 | vg0916411068 | G | T | 4.170e-03 | ATAC-seq, flag leaf, rep1 |
| chr09 | 17600453 | vg0916411523 | TG | T | -4.380e-02 | ATAC-seq, flag leaf, rep1 |
| chr09 | 17599142 | vg0916410213 | C | A | -5.410e-02 | ATAC-seq, flag leaf, rep2 |
| chr09 | 17599229 | vg0916410299 | C | G | -1.120e-01 | ATAC-seq, flag leaf, rep2 |
| chr09 | 17599532 | vg0916410603 | G | C | 6.120e-05 | ATAC-seq, flag leaf, rep2 |
| chr09 | 17599577 | vg0916410648 | G | T | -5.220e-02 | ATAC-seq, flag leaf, rep2 |
| chr09 | 17599855 | vg0916410925 | T | G | 1.660e-02 | ATAC-seq, flag leaf, rep2 |
| chr09 | 17599981 | vg0916411051 | C | A | 2.470e-02 | ATAC-seq, flag leaf, rep2 |
| chr09 | 17599991 | vg0916411061 | C | G | -3.610e-02 | ATAC-seq, flag leaf, rep2 |
| chr09 | 17599998 | vg0916411068 | G | T | 2.830e-03 | ATAC-seq, flag leaf, rep2 |
| chr09 | 17600453 | vg0916411523 | TG | T | -2.680e-02 | ATAC-seq, flag leaf, rep2 |
| chr09 | 17599142 | vg0916410213 | C | A | -6.880e-02 | ATAC-seq, stamen & pistil, rep1 |
| chr09 | 17599229 | vg0916410299 | C | G | -1.490e-01 | ATAC-seq, stamen & pistil, rep1 |
| chr09 | 17599532 | vg0916410603 | G | C | -3.430e-03 | ATAC-seq, stamen & pistil, rep1 |
| chr09 | 17599577 | vg0916410648 | G | T | -5.770e-02 | ATAC-seq, stamen & pistil, rep1 |
| chr09 | 17599855 | vg0916410925 | T | G | 6.600e-03 | ATAC-seq, stamen & pistil, rep1 |
| chr09 | 17599981 | vg0916411051 | C | A | 1.210e-02 | ATAC-seq, stamen & pistil, rep1 |
| chr09 | 17599991 | vg0916411061 | C | G | -5.560e-02 | ATAC-seq, stamen & pistil, rep1 |
| chr09 | 17599998 | vg0916411068 | G | T | 2.470e-03 | ATAC-seq, stamen & pistil, rep1 |
| chr09 | 17600453 | vg0916411523 | TG | T | -7.960e-03 | ATAC-seq, stamen & pistil, rep1 |
| chr09 | 17599142 | vg0916410213 | C | A | -7.160e-02 | ATAC-seq, stamen & pistil, rep2 |
| chr09 | 17599229 | vg0916410299 | C | G | -1.030e-01 | ATAC-seq, stamen & pistil, rep2 |
| chr09 | 17599532 | vg0916410603 | G | C | -5.830e-03 | ATAC-seq, stamen & pistil, rep2 |
| chr09 | 17599577 | vg0916410648 | G | T | -7.680e-02 | ATAC-seq, stamen & pistil, rep2 |
| chr09 | 17599855 | vg0916410925 | T | G | 1.540e-02 | ATAC-seq, stamen & pistil, rep2 |
| chr09 | 17599981 | vg0916411051 | C | A | 2.510e-02 | ATAC-seq, stamen & pistil, rep2 |
| chr09 | 17599991 | vg0916411061 | C | G | -5.070e-02 | ATAC-seq, stamen & pistil, rep2 |
| chr09 | 17599998 | vg0916411068 | G | T | 2.040e-04 | ATAC-seq, stamen & pistil, rep2 |
| chr09 | 17600453 | vg0916411523 | TG | T | -9.120e-03 | ATAC-seq, stamen & pistil, rep2 |
| chr09 | 17599142 | vg0916410213 | C | A | -1.050e-02 | ATAC-seq, lemma & palea, rep1 |
| chr09 | 17599229 | vg0916410299 | C | G | -1.790e-02 | ATAC-seq, lemma & palea, rep1 |
| chr09 | 17599532 | vg0916410603 | G | C | 1.030e-03 | ATAC-seq, lemma & palea, rep1 |
| chr09 | 17599577 | vg0916410648 | G | T | -7.830e-03 | ATAC-seq, lemma & palea, rep1 |
| chr09 | 17599855 | vg0916410925 | T | G | 4.130e-02 | ATAC-seq, lemma & palea, rep1 |
| chr09 | 17599981 | vg0916411051 | C | A | 1.320e-02 | ATAC-seq, lemma & palea, rep1 |
| chr09 | 17599991 | vg0916411061 | C | G | -5.100e-03 | ATAC-seq, lemma & palea, rep1 |
| chr09 | 17599998 | vg0916411068 | G | T | 5.060e-03 | ATAC-seq, lemma & palea, rep1 |
| chr09 | 17600453 | vg0916411523 | TG | T | -1.980e-02 | ATAC-seq, lemma & palea, rep1 |
| chr09 | 17599142 | vg0916410213 | C | A | -7.560e-03 | ATAC-seq, lemma & palea, rep2 |
| chr09 | 17599229 | vg0916410299 | C | G | -9.430e-03 | ATAC-seq, lemma & palea, rep2 |
| chr09 | 17599532 | vg0916410603 | G | C | 9.940e-04 | ATAC-seq, lemma & palea, rep2 |
| chr09 | 17599577 | vg0916410648 | G | T | -7.120e-03 | ATAC-seq, lemma & palea, rep2 |
| chr09 | 17599855 | vg0916410925 | T | G | 4.550e-02 | ATAC-seq, lemma & palea, rep2 |
| chr09 | 17599981 | vg0916411051 | C | A | 6.420e-03 | ATAC-seq, lemma & palea, rep2 |
| chr09 | 17599991 | vg0916411061 | C | G | -3.310e-03 | ATAC-seq, lemma & palea, rep2 |
| chr09 | 17599998 | vg0916411068 | G | T | 2.580e-03 | ATAC-seq, lemma & palea, rep2 |
| chr09 | 17600453 | vg0916411523 | TG | T | -1.780e-02 | ATAC-seq, lemma & palea, rep2 |
| chr09 | 17599142 | vg0916410213 | C | A | -4.650e-03 | ATAC-seq, young panicle, rep1 |
| chr09 | 17599229 | vg0916410299 | C | G | -9.150e-03 | ATAC-seq, young panicle, rep1 |
| chr09 | 17599532 | vg0916410603 | G | C | 2.140e-03 | ATAC-seq, young panicle, rep1 |
| chr09 | 17599577 | vg0916410648 | G | T | -1.680e-02 | ATAC-seq, young panicle, rep1 |
| chr09 | 17599855 | vg0916410925 | T | G | 3.390e-02 | ATAC-seq, young panicle, rep1 |
| chr09 | 17599981 | vg0916411051 | C | A | 3.400e-03 | ATAC-seq, young panicle, rep1 |
| chr09 | 17599991 | vg0916411061 | C | G | -4.430e-03 | ATAC-seq, young panicle, rep1 |
| chr09 | 17599998 | vg0916411068 | G | T | 9.450e-04 | ATAC-seq, young panicle, rep1 |
| chr09 | 17600453 | vg0916411523 | TG | T | -3.800e-03 | ATAC-seq, young panicle, rep1 |
| chr09 | 17599142 | vg0916410213 | C | A | -4.270e-03 | ATAC-seq, young panicle, rep2 |
| chr09 | 17599229 | vg0916410299 | C | G | -6.220e-03 | ATAC-seq, young panicle, rep2 |
| chr09 | 17599532 | vg0916410603 | G | C | 4.230e-03 | ATAC-seq, young panicle, rep2 |
| chr09 | 17599577 | vg0916410648 | G | T | -2.550e-02 | ATAC-seq, young panicle, rep2 |
| chr09 | 17599855 | vg0916410925 | T | G | 4.930e-02 | ATAC-seq, young panicle, rep2 |
| chr09 | 17599981 | vg0916411051 | C | A | 2.190e-03 | ATAC-seq, young panicle, rep2 |
| chr09 | 17599991 | vg0916411061 | C | G | -3.140e-03 | ATAC-seq, young panicle, rep2 |
| chr09 | 17599998 | vg0916411068 | G | T | 7.350e-04 | ATAC-seq, young panicle, rep2 |
| chr09 | 17600453 | vg0916411523 | TG | T | -1.550e-03 | ATAC-seq, young panicle, rep2 |
| chr09 | 17599142 | vg0916410213 | C | A | -2.620e-03 | ATAC-seq, young panicle, rep3 |
| chr09 | 17599229 | vg0916410299 | C | G | -3.830e-03 | ATAC-seq, young panicle, rep3 |
| chr09 | 17599532 | vg0916410603 | G | C | 2.360e-03 | ATAC-seq, young panicle, rep3 |
| chr09 | 17599577 | vg0916410648 | G | T | -1.820e-02 | ATAC-seq, young panicle, rep3 |
| chr09 | 17599855 | vg0916410925 | T | G | 4.100e-02 | ATAC-seq, young panicle, rep3 |
| chr09 | 17599981 | vg0916411051 | C | A | 1.230e-03 | ATAC-seq, young panicle, rep3 |
| chr09 | 17599991 | vg0916411061 | C | G | -1.800e-03 | ATAC-seq, young panicle, rep3 |
| chr09 | 17599998 | vg0916411068 | G | T | 4.650e-04 | ATAC-seq, young panicle, rep3 |
| chr09 | 17600453 | vg0916411523 | TG | T | 5.140e-03 | ATAC-seq, young panicle, rep3 |
| chr09 | 17599142 | vg0916410213 | C | A | -2.100e-03 | ATAC-seq, young panicle, rep4 |
| chr09 | 17599229 | vg0916410299 | C | G | -4.830e-03 | ATAC-seq, young panicle, rep4 |
| chr09 | 17599532 | vg0916410603 | G | C | 2.360e-03 | ATAC-seq, young panicle, rep4 |
| chr09 | 17599577 | vg0916410648 | G | T | -7.050e-03 | ATAC-seq, young panicle, rep4 |
| chr09 | 17599855 | vg0916410925 | T | G | 2.260e-02 | ATAC-seq, young panicle, rep4 |
| chr09 | 17599981 | vg0916411051 | C | A | 1.590e-03 | ATAC-seq, young panicle, rep4 |
| chr09 | 17599991 | vg0916411061 | C | G | -1.720e-03 | ATAC-seq, young panicle, rep4 |
| chr09 | 17599998 | vg0916411068 | G | T | 8.930e-04 | ATAC-seq, young panicle, rep4 |
| chr09 | 17600453 | vg0916411523 | TG | T | 9.810e-03 | ATAC-seq, young panicle, rep4 |
| chr09 | 17599142 | vg0916410213 | C | A | -2.220e-03 | ATAC-seq, young panicle, rep5 |
| chr09 | 17599229 | vg0916410299 | C | G | -4.680e-03 | ATAC-seq, young panicle, rep5 |
| chr09 | 17599532 | vg0916410603 | G | C | 2.470e-03 | ATAC-seq, young panicle, rep5 |
| chr09 | 17599577 | vg0916410648 | G | T | -7.670e-03 | ATAC-seq, young panicle, rep5 |
| chr09 | 17599855 | vg0916410925 | T | G | 2.090e-02 | ATAC-seq, young panicle, rep5 |
| chr09 | 17599981 | vg0916411051 | C | A | 1.440e-03 | ATAC-seq, young panicle, rep5 |
| chr09 | 17599991 | vg0916411061 | C | G | -1.550e-03 | ATAC-seq, young panicle, rep5 |
| chr09 | 17599998 | vg0916411068 | G | T | 7.200e-04 | ATAC-seq, young panicle, rep5 |
| chr09 | 17600453 | vg0916411523 | TG | T | 1.490e-02 | ATAC-seq, young panicle, rep5 |
| chr09 | 17599142 | vg0916410213 | C | A | -1.230e-02 | ATAC-seq, root, rep1 |
| chr09 | 17599229 | vg0916410299 | C | G | -1.160e-02 | ATAC-seq, root, rep1 |
| chr09 | 17599532 | vg0916410603 | G | C | -1.520e-03 | ATAC-seq, root, rep1 |
| chr09 | 17599577 | vg0916410648 | G | T | -2.600e-02 | ATAC-seq, root, rep1 |
| chr09 | 17599855 | vg0916410925 | T | G | 3.990e-02 | ATAC-seq, root, rep1 |
| chr09 | 17599981 | vg0916411051 | C | A | 2.090e-02 | ATAC-seq, root, rep1 |
| chr09 | 17599991 | vg0916411061 | C | G | -1.540e-02 | ATAC-seq, root, rep1 |
| chr09 | 17599998 | vg0916411068 | G | T | 1.170e-02 | ATAC-seq, root, rep1 |
| chr09 | 17600453 | vg0916411523 | TG | T | -7.470e-02 | ATAC-seq, root, rep1 |
| chr09 | 17599142 | vg0916410213 | C | A | -1.690e-02 | ATAC-seq, root, rep2 |
| chr09 | 17599229 | vg0916410299 | C | G | -1.790e-02 | ATAC-seq, root, rep2 |
| chr09 | 17599532 | vg0916410603 | G | C | -2.210e-03 | ATAC-seq, root, rep2 |
| chr09 | 17599577 | vg0916410648 | G | T | -3.140e-02 | ATAC-seq, root, rep2 |
| chr09 | 17599855 | vg0916410925 | T | G | 3.710e-02 | ATAC-seq, root, rep2 |
| chr09 | 17599981 | vg0916411051 | C | A | 2.460e-02 | ATAC-seq, root, rep2 |
| chr09 | 17599991 | vg0916411061 | C | G | -2.110e-02 | ATAC-seq, root, rep2 |
| chr09 | 17599998 | vg0916411068 | G | T | 1.110e-02 | ATAC-seq, root, rep2 |
| chr09 | 17600453 | vg0916411523 | TG | T | -6.840e-02 | ATAC-seq, root, rep2 |
| chr09 | 17599142 | vg0916410213 | C | A | -1.970e-02 | ATAC-seq, young leaf, rep1 |
| chr09 | 17599229 | vg0916410299 | C | G | -2.730e-02 | ATAC-seq, young leaf, rep1 |
| chr09 | 17599532 | vg0916410603 | G | C | -1.780e-03 | ATAC-seq, young leaf, rep1 |
| chr09 | 17599577 | vg0916410648 | G | T | -3.070e-02 | ATAC-seq, young leaf, rep1 |
| chr09 | 17599855 | vg0916410925 | T | G | 2.860e-02 | ATAC-seq, young leaf, rep1 |
| chr09 | 17599981 | vg0916411051 | C | A | 2.250e-02 | ATAC-seq, young leaf, rep1 |
| chr09 | 17599991 | vg0916411061 | C | G | -2.690e-02 | ATAC-seq, young leaf, rep1 |
| chr09 | 17599998 | vg0916411068 | G | T | 6.180e-03 | ATAC-seq, young leaf, rep1 |
| chr09 | 17600453 | vg0916411523 | TG | T | -7.460e-02 | ATAC-seq, young leaf, rep1 |
| chr09 | 17599142 | vg0916410213 | C | A | -2.830e-02 | ATAC-seq, young leaf, rep2 |
| chr09 | 17599229 | vg0916410299 | C | G | -4.020e-02 | ATAC-seq, young leaf, rep2 |
| chr09 | 17599532 | vg0916410603 | G | C | -4.540e-03 | ATAC-seq, young leaf, rep2 |
| chr09 | 17599577 | vg0916410648 | G | T | -4.260e-02 | ATAC-seq, young leaf, rep2 |
| chr09 | 17599855 | vg0916410925 | T | G | 2.800e-02 | ATAC-seq, young leaf, rep2 |
| chr09 | 17599981 | vg0916411051 | C | A | 3.060e-02 | ATAC-seq, young leaf, rep2 |
| chr09 | 17599991 | vg0916411061 | C | G | -3.790e-02 | ATAC-seq, young leaf, rep2 |
| chr09 | 17599998 | vg0916411068 | G | T | 7.240e-03 | ATAC-seq, young leaf, rep2 |
| chr09 | 17600453 | vg0916411523 | TG | T | -4.220e-02 | ATAC-seq, young leaf, rep2 |